GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| THYM | cis | rs4888262 | 1 | rs8062783 | chr16:74691264 | RFWD3 | chr16:74655298-74700779:- | 0.2 | 4.44 | 2.42E-5 | Testicular germ cell tumor |
| THYM | cis | rs7223966 | 1 | rs8064261 | chr17:61705212 | TCAM1P | chr17:61934376-61941738:+ | -0.54 | -4.45 | 2.37E-5 | Body mass index |
| THYM | cis | rs7223966 | 1 | rs8068603 | chr17:61755211 | TCAM1P | chr17:61934376-61941738:+ | -0.54 | -4.47 | 2.2E-5 | Body mass index |
| THYM | cis | rs8078723 | 1 | rs8070454 | chr17:38160754 | GSDMA | chr17:38119226-38134019:+ | -0.89 | -9.76 | 5.45E-16 | Neutrophil count;White blood cell count;C-reactive protein and white blood cell count |
| THYM | cis | rs7223966 | 1 | rs8070650 | chr17:61744040 | TCAM1P | chr17:61934376-61941738:+ | -0.54 | -4.41 | 2.72E-5 | Body mass index |
| THYM | cis | rs8071789 | 1 | rs8071789 | chr17:38006333 | ZPBP2 | chr17:38024455-38034144:+ | 0.49 | 4.21 | 5.87E-5 | Selective IgA deficiency |
| THYM | cis | rs7223966 | 1 | rs8074771 | chr17:61735865 | TCAM1P | chr17:61934376-61941738:+ | -0.54 | -4.41 | 2.72E-5 | Body mass index |
| THYM | cis | rs7223966 | 1 | rs8075257 | chr17:61728750 | TCAM1P | chr17:61934376-61941738:+ | -0.54 | -4.44 | 2.41E-5 | Body mass index |
| THYM | cis | rs7223966 | 1 | rs8077265 | chr17:61732727 | TCAM1P | chr17:61934376-61941738:+ | -0.54 | -4.47 | 2.2E-5 | Body mass index |
| THYM | cis | rs8078723 | 1 | rs8078723 | chr17:38166879 | GSDMA | chr17:38119226-38134019:+ | -0.87 | -9.52 | 1.73E-15 | Neutrophil count;White blood cell count;C-reactive protein and white blood cell count |
| THYM | cis | rs7223966 | 1 | rs8080211 | chr17:61729882 | TCAM1P | chr17:61934376-61941738:+ | -0.54 | -4.18 | 6.58E-5 | Body mass index |
| THYM | cis | rs7223966 | 1 | rs8081612 | chr17:61724695 | TCAM1P | chr17:61934376-61941738:+ | 0.51 | 4.28 | 4.55E-5 | Body mass index |
| THYM | cis | rs2275426 | 1 | rs809775 | chr1:46538040 | CCDC163P | chr1:45960581-45965646:- | -0.49 | -6 | 3.55E-8 | Body mass index |
| THYM | cis | rs10416265 | 1 | rs8100392 | chr19:33605933 | GPATCH1 | chr19:33571786-33621318:+ | 0.37 | 4.33 | 3.69E-5 | Bone properties (heel) |
| THYM | cis | rs10416265 | 1 | rs8110181 | chr19:33605939 | GPATCH1 | chr19:33571786-33621318:+ | 0.37 | 4.33 | 3.69E-5 | Bone properties (heel) |